Radical ions for electron transfer dissociation

ABSTRACT

Radical anions for use in the fragmentation of positively charged biopolymer ions by means of electron transfer are produced from substances previously unknown for use as ETD production substances. The inventive substances produce radical anions that lead to electron transfer dissociations with a high yield of fragment ions. The substances have high volatility that allows them to be kept in unheated containers outside the vacuum system and transported into the vacuum system to an in vacuum electron attachment ion source via unheated lines and low molecular weights that allow the measurement of even very light fragment ions. In one embodiment, a suitable substance is 1-3-5-7-cyclooctatetraene.

BACKGROUND

The invention relates to the fragmentation of biopolymer ions withmultiple positive charges by means of electron transfer (ETD=electrontransfer dissociation) in reactions with radical anions. The sequencesof the basic building blocks of biopolymers and their posttranslationalmodifications (PTM) are nowadays predominantly determined using tandemmass spectrometers. A key technology used for this is fragmentation ofthe biopolymer ions. There are two fundamentally different types offragmentation—ergodic and non-ergodic or electron-induced—and a numberof methods are known for both of these.

Peptides and proteins in particular will be considered below asbiopolymers. Electron-induced fragmentation of peptide or protein ionsis complementary to ergodic fragmentation, first of all because itcleaves the chain of amino acids at different amino acid locations, andsecondly because it does not cut off the side chains of theposttranslational modifications during fragmentation, as is done byergodic fragmentation. Comparing the fragment ion spectra obtained fromergodic and non-ergodic, electron-induced fragmentations allows both thesequences and the modifications to be read.

The simplest electron-induced method is electron transfer dissociation(ETD), which occurs as a reaction between multiply positively chargedanalyte ions and special radical anions. By using particular species ofnegative reactant ions in order to cleave biopolymer ions with multiplepositive charges, particularly peptide or protein ions, an electron istransferred to the analyte ion which immediately experiences a fractureof the backbone chain. The reactant ions are usually radical anions ofthe form M.⁻, which readily donate electrons. The prior art is describedin patents US 2005/0199804 A1 (D. F. Hunt et al.) and DE 10 2005 004 324B4 (R. Hartmer and A. Brekenfeld). Both these documents describe thefragmentation of peptide or protein ions with multiple positive chargesby reactant anions using this method.

For the electron transfer dissociation method, knowledge of substancesfor the generation of suitable radical reactant ions is crucial. Thesesubstances must be capable of quickly and very efficiently bindingelectrons stably, but only weakly, in special electron attachment ionsources. Favorable ETD substances so far known have low but stillpositive electron affinities in the region of approximately 0.55±0.25eV. The electrons are thus weakly bound to these substances and caneasily be removed by positively charged ions and transferred to them.

The fundamental relationships between electron affinity and electrontransfer are presented in the comprehensive review article by P. Kebarleand S. Chowdhury, Chem. Rev. 1987, 7, 513-534, “Electron Affinities andElectron-Transfer Reactions”.

The patent of D. F. Hunt et al. cited above explains that suchsubstances are found in the group of polycyclic aromatic hydrocarbons.Specifically, the substances anthracene, naphthalene, fluorene,phenanthrene, pyrene, fluoranthene, chrysene, triphenylene, perylene,2,2′-biquinoline, acridine and others are listed. As far as recorded inthe NIST database (NIST chemistry webbook), these substances haveelectron affinities (EA) between 0.3 and 0.8 electronvolts. Fluoranthene(EA=6.7 eV) and 2,2′-biquinoline are emphasized as being particularlysuitable for pure electron transfer dissociation with a high yield offragment ions and without a significant proportion of proton transferreactions. With the other substances (except for perylene), as can beseen in Table 1 of the cited patent, the electron attachment ion sourcealso supplies non-radical anions of the form (M-1)⁻, which result inundesirable proton transfer reactions. Therefore, these polycyclicaromatics are not all equally useful for ETD.

A high effectiveness of the anions of a substance for ETD means that, onthe one hand, a high yield of fragment ions of more than 50% of the ionsto be dissociated is obtained and, on the other hand, the proportion ofprotein transfer reactions is less than 30%, preferably less than 10%.In this sense, fluoranthene and 2,2′-biquinoline are particularlyeffective for ETD.

However, these polycyclic aromatics, including fluoranthene, which hasuntil now been known as very effective for ETD, have a very low vaporpressure in the order of 1 pascal at 20° Celsius, or even well belowthat. In electron attachment ion sources, the substances must be presentwith partial pressures of approximately 100 to 1000 pascal; thepolycyclic aromatics therefore have to be heated in their container tobetween 50° and 250° C., and fed through heated lines to a heatedelectron attachment source. This makes the equipment difficult to designif the substance container is to be installed outside the vacuum system.The difficulties particularly concern feeding the heated gas linethrough the unheated wall of the vacuum system without generating a coollocation where the substance vapor will condense.

In the prior art, therefore, a much simpler solution is usually applied.This involves mounting the heated substance container in the vacuumsystem close to the electron attachment source, or even heating thesubstance container by means of the electron attachment ion source,which is itself automatically heated sufficiently by the thermioniccathode required for electron emission. The disadvantage of thisarrangement, however, is that in order to refill the container, not onlymust the container and the electron attachment source be cooled, butalso the vacuum system must be vented and opened. Venting the vacuumsystem is, however, to be avoided whenever possible in massspectrometry, as a considerable amount of time and effort are needed torestart the mass spectrometer, and recalibrating the mass scale andother settings are usually necessary. A further disadvantage is that itis difficult to design the equipment in such a way that the supply ofsubstance to the electron attachment source can be interrupted duringpauses in measurement or during measurements that do not use ETD.Consequently, in most cases, no method of interruption is provided; butthis means continuous consumption of the ETD substances and thereforemore frequent refilling.

In addition to electron transfer dissociation, other kinds of reactionbetween analyte ions with multiple positive charges and particularspecies of negatively charged ions can reduce the number of the chargeson each of the positive analyte ions (“PTR”=proton transfer reactions,also known as “charge stripping”). This requires different kinds ofanion, usually non-radical anions. In favorable cases these can beobtained from the same substances in special, switchable electronattachment ion sources (patent application DE 10 2006 049 241 A1; R.Hartmer). By reducing the number of charges, very heavy, highly-chargedanalyte ions can be converted into ions that are less highly charged, inorder to reduce the complexity of the mass spectra from mixtures oflarge numbers of heavy analyte ions with high numbers of charges each.In the limiting case, the analyte ions or the fragment ions can beconverted down to singly charged ions, which then yield mass spectrathat are much easier to interpret. In some types of mass spectrometer itis only this charge reduction that makes it possible to resolve theisotope groups of all the ions signals into individual mass-to-chargeratios m/z, in order, as those skilled in the art know, to determine thenumber of charges z on the ions of this isotope group from the spacingbetween the ion signals, and so determine their physical mass m.

Under favorable conditions, the electron attachment ion source can beused to generate both types of anion—the radical anions for electrontransfer dissociation and the non-radical anions for charge reduction.To a large extent this ion source is identical to conventional ionsources for negative chemical ionization (NCI), but is operated with aspecial gas with which the injected electrons are quickly thermalized.Methane is frequently used as the thermalization gas. Hydrogen radicalsare also created by the electron bombardment. As disclosed in patentapplication DE 10 2006 049 241 A1, given a suitable substance, changingthe voltage used to extract the anions is sufficient to deliver one typeof anion or the other.

The reactions both for electron transfer dissociation and for chargereduction predominantly take place in reaction cells in which bothpositive and negative ions can be stored. Reactions in ion guide systemsare also known. The reaction cells are often filled with a damping gasin which the ion movements are thermalized. The reaction cells may, forinstance, consist of two-dimensional RF ion traps with specialpseudopotential barriers at the ends, or three-dimensional RF ion traps.Devices with both kinds of reaction cell are available on the market,and are known to those skilled in the art. The positive analyte ions andthe negative reactant ions are usually introduced one after the otherinto the ion trap where they are mixed together. The reactions thenproceed without any further intervention.

In some cases, however, the fragmentation may be incomplete because thefragment ions formed by electron transfer dissociation remainassociated. It is, however, also known that in such cases the associatedfragment ions can be made to collide with the damping gas through gentleexcitation of their secular oscillations, causing the associations todissolve.

Quadrupole RF ion traps can be used as mass analyzers for the productions created. It is then necessary to ensure that the form of theelectrodes is very precisely hyperbolic in order to permit preciselyresonant excitation, especially for the ions to be ejected with goodmass resolution for their measurement. Measurement of themass-sequentially ejected ions results in a mass spectrum. The accurateshape of the electrodes is necessary so that, by means of a harmonicpseudopotential field, the excitation frequencies of the oscillatingions are kept constant and independent of the oscillation amplitudeduring resonant excitation. The electrodes must therefore be shaped sothat a well-formed quadrupole field is generated inside.

In some quadrupole mass spectrometers, a small proportion ofhigher-order multipole fields is deliberately superimposed onto thequadrupole field. Such deliberately generated deviations from a purequadrupole field can, on the one hand, introduce non-linear, very strongand sharply defined resonance conditions and, on the other hand, holdthe ions in resonance when a mass scan is in progress.

In three-dimensional ion traps, the ions mix of their own accord as theyare introduced. In two-dimensional ion traps, a somewhat differentprocedure is sometimes used. If reactions between positive and negativeions are to be created in such linear ion traps, the clouds of positiveanalyte ions and the negative reactant ions are first collected indifferent sections, known as the prefilter and postfilter; then aspecial switching of the axis potentials sends them to be mixed in thecentral region of the linear ion trap. This method is disclosed in greatdetail in the patent application already cited above, US 2005/0199804 A1(D. F. Hunt et al.).

The RF ion traps always have a low mass boundary for the storage ofions. Ions below a threshold mass m/z cannot be stored. The thresholdmass is proportional to the amplitude of the RF field, and can bechanged by altering the RF voltage. This phenomenon prevents lightfragment ions from being stored after they have been created by thefragmentation reaction. On the other hand, the phenomenon can beexploited for ETD so that, after sufficient reaction time, excessreactant ions are very quickly ejected, in fractions of a millisecond,by briefly increasing the RF voltage, if the reactant ions are lightenough. This method is more advantageous than ejection by means ofresonant excitation, since the latter method takes longer because anentire isotope group always has to be ejected, and this makes a hole inthe mass spectrum.

The multiply charged positive analyte ions are usually created inelectrospray ion sources. This automatically generates ions that have,as a rule of thumb, approximately one charge for every 700 daltons ofanalyte molecule mass, although the number of charges shows a widedistribution. For analyte molecules with a physical mass of around10,000 daltons, ions with a wide range of charge levels are created,extending from about seven to about 20 charges. For these ion mixtures,it is expedient to carry out PTR charge reduction—by means of reactionswith suitable negative, non-radical reactant ions—before, during orafter the electron transfer dissociation. It is therefore favorable ifthe non-radical reactant ions required for this can be created in thesame electron attachment ion source, preferably from the same substance.

SUMMARY

In accordance with the principles of the invention, substancespreviously unknown for use as ETD substances are used to produce radicalanions that lead to dissociations by electron transfer with a high yieldof fragment ions. In addition these substances have favorable propertiesfor their handling and for the associated analytical methods. Forexample, a high volatility of the substances allows them to be kept inunheated containers outside the vacuum system, making it easier toreplace empty substance containers. A low molecular weight of thesubstances allows the measurement of even very light fragment ions, downto individual terminal amino acids. Further, such substances have theability to also supply, by choice, non-radical anions from the electronattachment ion source for reducing the charges on the biopolymer ions ortheir fragment ions.

In one embodiment, substances are chosen from a class of aliphaticcompounds with electron affinities between 0.3 and 0.8 electronvolts forthe generation of radical anions for ETD. Few substances with knownelectron affinities that satisfy these conditions are found in largedatabases like the NIST chemistry webbook. However, throughsubstitutions with electron-attracting or electron-repelling groups, itis often possible to first create aliphatic compounds that initially donot satisfy these conditions and then convert the aliphatic compoundsinto substances with suitable electron affinities and with a stabilitythat allows radical anions to be formed that are effective for ETD. Suchaliphatic hydrocarbons, or their substitutes, usually have far highervapor pressures than the polycyclic aromatics.

Unsubstituted 1-3-5-7-cyclooctatetraene ([8]-annulene; C₈H₈; FIG. 1) ispresented here as an example of a particularly favorable startingsubstance from a suitable class of aliphatic compounds. This monocyclicpolyene is classified as non-aromatic and is therefore, by definition,aliphatic. In addition to a high yield of ETD fragment ions, it offersthe further advantages of a moderately high vapor pressure of around1000 pascal at 20° C., and a relatively low molecular weight of 104daltons. 1-3-5-7-cyclooctatetraene is a chemically stable, golden-yellowliquid with a melting point of 0° Celsius and a boiling point of around140° Celsius. The substance can be held in containers that are outsidethe vacuum system of mass spectrometers, at room temperature. If thethermalization gas for the electron attachment ion source, methane forinstance, flows through the gas region of this container over thesurface of the liquid, it transports enough substance vapor to theelectron attachment ion source, where sufficient radical ions forelectron transfer dissociation can be formed from this vapor. The lowmolecular weight of 104 daltons is advantageous in that, aftermass-unstable ejection of the unused reactant ions, fragment ions of lowmass can also be seen in the reaction cell, consisting of two, or evenof only one amino acid. For instance, the formerly terminal C₁ fragmentions of 13 of the 20 amino acids can be detected.

On the other hand, non-radical anions with a mass of 99 daltons for usein charge reduction can be generated from 1-3-5-7-cyclooctatetraene in asuitable electron attachment ion source.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 illustrates the structure of 1-3-5-7-cyclooctatetraene([8]-annulene).

FIG. 2 is a diagram of an ion trap mass spectrometer in which ETD can becarried out, with an electrospray ion source (1, 2) to generate multiplycharged positive analyte ions, an electron attachment ion source (8) togenerate the negatively charged reactant ions (radical anions), and theend cap electrodes (11, 13) and ring electrode (12) of a 3D ion trapthat serves as the reaction cell for the ETD. The ion guide (9), hereimplemented as a multipole rod system, can feed both positive andnegative ions to the ion trap. According to the prior art, the substanceused to produce the radical anions is kept in a heated container (18)close to the ion source (8); the use of volatile starting substances inaccordance with this invention makes it possible, however, to mount asubstance container (19), through which methane gas flows from areservoir (20), outside the vacuum system and without heating.

FIG. 3 shows a spectrum of negative ions produced from cyclooctatetraenewith the radical anion at a mass of 104 Da, which greatly predominateshere and is used to carry out the electron transfer dissociation. Nextto it, a weak signal can also be seen at a mass of 99 Da, formed by anon-radical anion. It can be preferentially extracted by switching overthe electron attachment source, and so used for charge reduction.

FIG. 4 shows a mass spectrum of the positively charged fragment ionsthat are created by ETD with cyclooctatetraene radical anions fromtriply charged ions of the peptide “substance P” (molecular weight1347.66 Da).

FIG. 5 shows, for comparison, a conventional mass spectrum of thefragment ions from triply charged ions of substance P, generated withradical anions of fluoranthene. The comparison shows that theeffectiveness of the two starting substances is of a similar magnitude.The same fragment ions are formed. The slight variations in intensitiesare normal for spectra that are obtained from a single filling of thereaction cell.

DETAILED DESCRIPTION

While the invention has been shown and described with reference to anumber of embodiments thereof, it will be recognized by those skilled inthe art that various changes in form and detail may be made hereinwithout departing from the spirit and scope of the invention as definedby the appended claims.

The invention provides aliphatic compounds with electron affinitiesbetween 0.3 and 0.8 electronvolt to generate the radical ions forelectron transfer dissociation.

Electron affinity is the energy required to remove the electron from theradical anion—in other words, the binding energy of the additionalelectron. On the one hand, this binding energy must not be too smallbecause the substance would scarcely pick up electrons, and, afterpicking up an electron, the anions would also easily lose the electronagain. On the other hand, the binding energy must not be too large, asotherwise the positive biopolymer ions will not be able to attract theelectron, causing detachment—in other words, electron transfer could notoccur.

The term “aliphatic” is defined in organic chemistry as “non-aromatic”.In the very extensive NIST database for organic substances(webbook.nist.gov), however, the table of substances with known electronaffinities in the range of EA=0.3 to 0.8 eV, which has well over 200entries (including, however, many substance anions or radicals),contains only a few such aliphatic compounds, whereas nearly all thepolycyclic aromatics from the patent publication US 2005/0199804 A1 (D.F. Hunt et al.) cited above can be found there. If aliphatic compoundswithout metallic heteroatoms and with molecular weights between 80 and200 daltons are considered, then only the following six substances areto be found in this range:

-   trichloroethene (m=131.39 Da; EA=0.400 eV);-   1,1,1,3,3,3-hexafluoro-2-propanone (m=166.02 Da; EA=0.442 eV);-   tetrafluorofuran-2,5-dione (perfluoro-succinic acid anhydride,    m=172.03 Da; EA=0.500 eV);-   1,3,5,7-cyclooctatetraene (m=104.15 Da; EA=0.550 eV);-   tetrachloroethene (m=165.83 Da; EA=0.64 eV);-   2,3-butanedione (m=86.09 Da; EA=0.69 eV).

Since it is occasionally advantageous to use very heavy radical anions,the C₈₄ fullerene, which has a molecular weight of m=1008.9 Da and anelectron affinity of EA=0.41 eV, should also be mentioned here.

Not all of these substances, however, supply suitable radical anions forelectron transfer dissociation. For example, after picking up anelectron in the electron attachment ion source,tetrafluorofuran-2,5-dione decomposes into a more stable ion that is nolonger suitable for donating electrons.

Fundamental considerations suggest that substances with double bonds,particularly polyenes, are especially advantageous substances. Polyenesare organic compounds containing two or more carbon-carbon double bonds.Depending on the number of carbon-carbon double bonds in the molecule,the polyenes are classified as dienes (with two double bonds), trienes(with three), tetraenes (with four), pentaenes (with five) etc.

Monocyclic polyenes, which according to Hückel's rule have only 4nπ-electrons in the ring instead of the 4n+2 π-electrons of the aromatics(where n=0, 1, 2, 3 . . . ), belong to the so-called “anti-aromatics”.They are not aromatic compounds, as is also shown by NMR analysis, andare therefore classified as aliphatic. According to the HMO model ofHückel, anti-aromatics have unfavorable energy levels. They aretherefore less stable than aromatic compounds.

To supplement the substances listed in the NIST table, it is possible toproduce additional aliphatic compounds by substituting appropriategroups to change the electron affinity of aliphatic hydrocarbons. Inorder to change the electron affinity by means of appropriatesubstituents, heteroatoms such as nitrogen, oxygen or sulfur can besubstituted for carbon atoms, or chemical groups can be inserted insteadof the hydrogen atoms. Electron-attracting groups, such as the cyanogroup (which yields nitriles), the nitro group or the halogens such asfluorine, chlorine or bromine, increase the electron affinity.Electron-repelling groups, on the other hand, such as nitrites or ethergroups (yielding O-alkyls) lower the electron affinity.

As an example here we consider isoamyl nitrite (C₅H₁₁NO₂), which isproduced as an aliphatic ester of nitrous acid with a molecular weightof m=117.15 Da. Its use as a substance for ETD, however, showed that ananion with a mass of m=85 Da formed as a decomposition product in theelectron attachment ion source. Although this anion was able to createelectron transfer dissociation, the effectiveness was not in the desiredrange.

As an exceptionally successful example from the aliphatic polyenesubstance class, we should mention unsubstituted1-3-5-7-cyclooctatetraene (COT), which also has other favorableproperties in addition to a high yield of fragment ions when used forETD. Cyclooctatetraene with four double bonds in a ring of eight (seeFIG. 1) is a golden yellow liquid with a vapor pressure around 1000pascal at 20° Celsius. It is no more poisonous than many other chemicalsused in the laboratories concerned, and is therefore easy to handle.Cyclooctatetraene possesses 8 π-electrons, and therefore belongs to theanti-aromatics. It is non-planar, so the double bonds are not conjugated(as NMR investigations also show); for this reason too, it is notclassified as aromatic, and is therefore aliphatic. The electronaffinity is 0.55 eV. It yields radical anions with a mass of 104daltons, and these provide an outstanding yield of fragment ions whenused for electron transfer dissociation. All the hydrogen atoms are“vinylic” and therefore very strongly bonded to the carbon atom, whichsimply means that the radical anion of COT is quite stable.

FIGS. 3 and 4 show the mass spectra of the radical anions of1-3-5-7-cyclooctatetraene and the dissociation products from substance Pobtained using it. For comparison, FIG. 5 shows the dissociationproducts of substance P obtained with radical anions of fluoroanthene.It can be seen that the ETD-effectiveness of the radical ions of the twostarting substances is similar, and that exactly the same fragment ionspecies are formed. The slight differences in intensities are within thenormal range of variations for single spectra.

Some forms of 1-3-5-7-cyclooctatetraene obtained through alkylsubstitution (alkyl=methyl, ethyl, propyl, isobutyl), and some forms ofcyclooctatetraene with heteroatoms are also suitable for the creation ofETD reactant ions.

We should mention that the patent application cited above, US2005/0199804 A1 (D. F. Hunt et al.), also reports investigations of theuse of anions of non-aromatic substances for ETD. For example,perfluorotributylamine, sulfur hexafluoride andperfluoro-1,3-dimethylcyclohexane were examined. As expected, the anionsof these substances generated electron transfer dissociation, but onlyto a very small extent, while simultaneously occurring proton transferreactions were dominant, meaning that these substances do not have highETD efficiency. These investigations therefore have little to do withthe invention described here, instead, they point in precisely theopposite direction, as is shown by the focus of the further work carriedout on polycyclic aromatics by the working group around D. F. Hunt.

A favorable embodiment of an ion trap mass spectrometer suitable forcarrying out a method according to the invention is shown schematicallyin FIG. 2. Here, an electrospray ion source (1) with a spray capillary(2) is used outside the mass spectrometer's vacuum system to ionizebiopolymers. It will be assumed here that a mixture of digestionpeptides from a large protein is to be analyzed. The ions are fed in theusual way through an inlet capillary (3) and a skimmer (4) with the ionguide systems (5) and (9), through the pressure stages (15), (16), (17),into a 3D ion trap with end cap electrodes (11 and 13) and a ringelectrode (12), where they are trapped in the usual way. The ion guidesystems (5) and (9) consist of parallel pairs of rods to whichalternating phases of a RF voltage are applied. They can be implementedas quadrupole, hexapole or octopole rod systems.

A first mass spectrum, acquired by resonant excitation of the ions withmass-selective ejection and measurement of the ejected ions in the iondetector (14), provides an overview of the digestion peptides, sincealmost exclusively ionized molecules rather than fragment ions, albeitwith various levels of charge, are formed in the electrospray ionsource. If one or more peptides are now to be analyzed to find theirsequence of amino acids, then usual techniques are applied to isolate,for example, the triply charged ions of this peptide; this means thatthe ion trap is first overfilled, and then all the ions that are nottriply charged ions of this peptide are ejected from the ion trap. Thetriple charge can be recognized from the spacing of the isotopic lineswhich for triply charged ions is precisely ⅓ of an atomic mass unit. Ifnot enough triply charged ions are available, it is also possible to useions with a different level of charge.

The oscillations of these now isolated, multiply charged ions are thendamped and the ions are assembled in the center of the trap during abrief pause of a few milliseconds by the action of the collision gas,which is always present. Then the negatively charged reaction ions areadded. These ions are generated here in a separate ion source (8) fornegative chemical ionization (an electron attachment ion source), andchanneled through a small ion guide (7) to an ion switch, where they arethreaded into the ion guide system (9) leading to the ion trap (11, 12,13). Ion guide systems of this kind can convey both positive andnegative ions. In the embodiment illustrated, the ion switch consistssimply of an apertured diaphragm (6), to which suitable DC potentialscan be applied, and a shortening of one or two of the rods that comprisethe ion guide (9). It is particularly advantageous for this very simpletype of ion switch to use an octopole system as the ion guide and tojust shorten two pole rods. If suitable voltages are applied to theapertured diaphragm (6), this ion switch can allow the ions from theelectrospray ion source (1, 2) to pass unhindered; with other voltagesthe negative ions from the ion source (8) are reflected into the ionguide (9). They pass via this ion guide (9) into the ion trap, wherethey are held in the usual way by an injection lens (10). They reactimmediately (within a few milliseconds) with the positive ions.

According to the prior art, the low vapor pressure of the substancesused to produce the radical ions meant that these substances had to bekept in a container (18) that could be heated to between 50° and 250°Celsius, and was mounted close to the electron attachment ion source(8), which was also heated. In most cases, no valves were used, so itwas not possible to shut off the substance container. As described abovein the introductory section, this arrangement is disadvantageous becauseit causes the substances to be consumed rapidly, and refilling withsubstance requires the mass spectrometer's vacuum system to be vented.The invention allows substances with high vapor pressure to be used forETD, which means that the substance, for instance the cyclooctatetraene,can be held in a container (19) outside the mass spectrometer's vacuumsystem. This makes refilling very easy. The container (19) can,moreover, be kept at room temperature, thus avoiding the difficulty ofhaving to feed a heated gas line through the unheated walls of thevacuum system. For example, methane used as a thermalization gas for theelectron attachment ion source can flow directly from a reservoir (20)through this container (19). The methane transports enough substance tocreate the radical anions. A valve (21) can easily be installed to allowthe gas line to be closed so that the supply of substance andthermalization gas can be interrupted if necessary. It is also possibleto use several substances alternately by means of several containers andseveral valves.

In the process of electron transfer dissociation, the fragment ions thatare formed sometimes remain associated and form radical cations which,although not very stable, do not immediately decay. It is thereforeadvantageous to apply a weak, dipolar, AC excitation voltage to the twoend caps (11, 13) of the ion trap to generate resonant excitation ofthese radical cations. The frequency required for this AC excitationvoltage can be calculated from the known mass of these radical cationsand from their known charge. The effect of this excitation voltage isthat these radical cations quickly decay, for which only relatively weakimpacts are needed, and the yield of the desired fragment ion species isthereby increased.

The non-radical anions with a mass of m=99 Da that are generated fromthe cyclooctatetraene in the electron attachment ion source cansuccessfully be used for charge reduction by proton transfer reactions.Unfortunately, initial trials did not achieve an entirely cleanextraction of the radical anions from the ion source. However, sincecharge reduction and electron transfer dissociation are usually carriedout simultaneously in order to save time, the ion species that have notbeen cleanly separated can nevertheless be used effectively. The ratioof the two types of ion can be adjusted between broad limits by means ofthe extraction voltage at the ion source.

It is probable that the conditions for extracting the non-radical ionsfrom the ion source can be improved through design modifications.However, if, in accordance with the invention, the substance containeris mounted at ambient temperature outside the vacuum system with a valvein the gas line, it is also easily possible to introduce othersubstances with similar vapor pressures from additional containers andthrough additional valves into the electron attachment ion source; oneof these substances can, for instance, be used solely for creatingnon-radical anions if a clean proton transfer reaction withoutsimultaneous ETD is required.

Given the knowledge that substances with low vapor pressure or lowmolecular weight can also be used as substances for the production ofradical anions for ETD, those skilled in the art can take furthermeasures that make it easier to handle the mass spectrometer or to carryout analytical procedures.

What is claimed is:
 1. A mass spectrometer having a vacuum system andcomprising: an electron attachment ion source that is located inside thevacuum system and produces radical anions for electron transferdissociation of biopolymers from a substance; a container for thesubstance that is located outside the vacuum system; and a transportsystem for transporting the substance from the container to the electronattachment ion source.
 2. The mass spectrometer of claim 1, wherein thecontainer is maintained at ambient temperature.
 3. The mass spectrometerof claim 1, wherein the transport system also transports to the electronattachment ion source a thermalization gas that carries a vapor of thesubstance from the container to the electron attachment ion source. 4.The mass spectrometer of claim 1, further comprising a valve in thetransport system located between the container and the electronattachment ion source for controlling the flow of the substance to theelectron attachment ion source.
 5. The mass spectrometer of claim 4,further comprising a plurality of containers, each container containinga substance for producing radical anions for electron transferdissociation of biopolymers and being attached to the transport systemby a valve to control the flow of the contained substance to theelectron attachment ion source.
 6. The mass spectrometer of claim 5,wherein the electron attachment ion source is constructed to generatenon-radical ions for charge reduction by proton transfer reactions inaddition to radical anions for electron transfer dissociation ofbiopolymers.
 7. The mass spectrometer of claim 5, wherein one of theplurality of containers contains a substance for the generation ofnon-radical ions for charge reduction.
 8. The mass spectrometer of claim1, wherein the electron attachment ion source is constructed to generatenon-radical ions for charge reduction by proton transfer reactions inaddition to radical anions for electron transfer dissociation ofbiopolymers.
 9. The mass spectrometer of claim 8, wherein the electronattachment ion source is constructed to generate the non-radical anionsand the radical anions from the same substance.